![]() ![]() We’re working on easy uploads in an interactive way. The example below shows how we get gene modules of cell types in COVID-19 patients and healthy donors.Ĭurrently we only support uploads from our end. Shred structure decides the way and scope for comparisons of cells. Input files of Scanpy Anndata or Seurat object will be supported in the near future. Raw counts will be normalized first (we usually use Log2(CPM+1) normalization) and then used for gene module generation.Ĭell annotation table should contain metadata of each barcode, including information of cluster, cell class, subclass, disease conditions and so on. ![]() Gene module generation requires 3 files from users’ upload: expression table, cell annotation table and shred structure.Įxpression tables could be text files (csv, tsv or txt files), which contain raw counts or normalized expression levels. Tutorial Upload data and generate gene modules Please contact us if you have interests in contributing to it. We’re still adding more data to build comprehensive signature database for human cells. They’re categorized into several atlases: ScopeĬurrently we have curated over 45 public single-cell studies covering various tissues in human, mouse and in-vitro cell lines. Using ToppCell, we can quickly build up an atlas of signatures for a single-cell study. Seamless connections to ToppGene and ToppCluster enable swift pathway enrichment and comparative analysis of single-cell data. Instead, it is an interactive toolkit that allows researchers to see and play with gene signatures in a hierarchically organized way. ToppCell doesn’t provide innovative computational algorithms for clustering or trajectory inference. It utilized modularized approaches to curate gene signatures of cells based on their lineages, cell classes, subclasses, clinical information and so on, which enables the generation of multi-layered atlases of cells with the potential to investigate the roles of ensembles of cell types, genes, pathways and procedures. To find out the best theme for your project is so much time-consuming work, reduce that time and use in productive work here we bring a list of Hugo documentation themes to find out the perfect choice for your project.ToppCell ( ) is a web portal designed for biologists and bioinformaticians to explore single-cell RNA-seq data swiftly in the era of single cell and high throughput sequencing. ![]() Currently, there are very few quality Hugo documentation themes available in the market. Hugo documentation themes are specially designed for the documentation site focusing on readability. Building the documentation site in the Hugo environment has lots of advantages like no speed issue, No security issue, Easy to edit, etc. Some well know firms are building their Documentation site using the Hugo ecosystem. Now big software and technology companies are converting their static site in Hugo. Hugo is a static site-building platform and is well known for its blazing-fast loading speed. Hugo is now getting popularity day by day especially among who want to avoid database and site speed issue. Docuapi - API Documentation Theme For Hugo.Docdock - Simple Hugo Documentation Theme.Kube - Hugo Documentation Theme For Developers & Designers.Dot - Best Free Hugo Documentation Theme.GoDocs -Best Hugo Documentation Theme. ![]()
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